Ikhnos: A Novel Software to Register and Analyze Bone Surface Modifications Based on Three-Dimensional Documentation.

The study of bone surface modifications (BSM) is crucial in understanding site formation processes and the identification of the causal agent behind bone assemblages in the fossil record. In that line, many efforts have been made to generate referential models based on feeding experiments and human butchery simulations that can then be used to interpret the patterns observed in archaeological and paleontological sites. Considering these needs, we developed a novel open-access three-dimensional (3D) software called Ikhnos for the study of BSM distribution patterns on limb long bones. This software is comprised of all the necessary tools for the 3D documentation of BSM and bone breakage patterns, as well as the subsequent statistical analysis of this data due to the integration of an exclusive R library, the IkhnosToolBox. Additionally, Ikhnos integrates tools for bone survivorship calculations that could facilitate the estimation of the minimum number of elements (MNE) and minimum number of individuals (MNI). As a demonstration of its precision, here we present a case study analyzing the modifications produced by wild and captive wolf (Canis lupus signatus) populations of the Iberian Peninsula on deer carcasses.

Evaluation of Different LiDAR Technologies for the Documentation of Forgotten Cultural Heritage under Forest Environments.

In the present work, three LiDAR technologies (Faro Focus 3D X130-Terrestrial Laser Scanner, TLS-, Kaarta Stencil 2-16-Mobile mapping system, MMS-, and DJI Zenmuse L1-Airborne LiDAR sensor, ALS-) have been tested and compared in order to assess the performances in surveying built heritage in vegetated areas. Each of the mentioned devices has their limits of usability, and different methods to capture and generate 3D point clouds need to be applied. In addition, it has been necessary to apply a methodology to be able to position all the point clouds in the same reference system. While the TLS scans and the MMS data have been geo-referenced using a set of vertical markers and sphere measured by a GNSS receiver in RTK mode, the ALS model has been geo-referenced by the GNSS receiver integrated in the unmanned aerial system (UAS), which presents different characteristics and accuracies. The resulting point clouds have been analyzed and compared, focusing attention on the number of points acquired by the different systems, the density, and the nearest neighbor distance.

Comprehensive Generation of Historical Construction CAD Models from Data Provided by a Wearable Mobile Mapping System: A Case Study of the Church of Adanero (Ávila, Spain).

This paper presents the results of a complex three-dimensional reconstruction of the church of Nuestra Señora de la Asunción (Ávila, Spain) as an example of a successful process of verticalization from point clouds to a comprehensive computer-aided design (CAD) model. The reconstruction was carried out using the novel and advanced wearable mobile mapping system ZEB-REVO in combination with a lifting pole, in order to cover the whole geometry of the temple and, also, to model the different constructive elements. To this end, a set of good practices was followed, which allowed for passing from reality to the CAD model, such as the use of closed loops or even the use of different parametric and non-parametric strategies to capture the real geometry of the elements. As a result, this paper outlines the main guidelines for passing from point clouds to comprehensive CAD models, the former being useful for the application of smart preventive conservation processes, heritage building information models or even advanced numerical simulations.

3D Insights into the Effects of Captivity on Wolf Mastication and Their Tooth Marks; Implications in Ecological Studies of Both the Past and Present.

Human populations have been known to develop complex relationships with large carnivore species throughout time, with evidence of both competition and collaboration to obtain resources throughout the Pleistocene. From this perspective, many archaeological and palaeontological sites present evidence of carnivore modifications to bone. In response to this, specialists in the study of microscopic bone surface modifications have resorted to the use of 3D modeling and data science techniques for the inspection of these elements, reaching novel limits for the discerning of carnivore agencies. The present research analyzes the tooth mark variability produced by multiple Iberian wolf individuals, with the aim of studying how captivity may affect the nature of tooth marks left on bone. In addition to this, four different populations of both wild and captive Iberian wolves are also compared for a more in-depth comparison of intra-species variability. This research statistically shows that large canid tooth pits are the least affected by captivity, while tooth scores appear more superficial when produced by captive wolves. The superficial nature of captive wolf tooth scores is additionally seen to correlate with other metric features, thus influencing overall mark morphologies. In light of this, the present study opens a new dialogue on the reasons behind this, advising caution when using tooth scores for carnivore identification and contemplating how elements such as stress may be affecting the wolves under study.

Early Pleistocene faunivorous hominins were not kleptoparasitic, and this impacted the evolution of human anatomy and socio-ecology.

Humans are unique in their diet, physiology and socio-reproductive behavior compared to other primates. They are also unique in the ubiquitous adaptation to all biomes and habitats. From an evolutionary perspective, these trends seem to have started about two million years ago, coinciding with the emergence of encephalization, the reduction of the dental apparatus, the adoption of a fully terrestrial lifestyle, resulting in the emergence of the modern anatomical bauplan, the focalization of certain activities in the landscape, the use of stone tools, and the exit from Africa. It is in this period that clear taphonomic evidence of a switch in diet with respect to Pliocene hominins occurred, with the adoption of carnivory. Until now, the degree of carnivorism in early humans remained controversial. A persistent hypothesis is that hominins acquired meat irregularly (potentially as fallback food) and opportunistically through klepto-foraging. Here, we test this hypothesis and show, in contrast, that the butchery practices of early Pleistocene hominins (unveiled through systematic study of the patterning and intensity of cut marks on their prey) could not have resulted from having frequent secondary access to carcasses. We provide evidence of hominin primary access to animal resources and emphasize the role that meat played in their diets, their ecology and their anatomical evolution, ultimately resulting in the ecologically unrestricted terrestrial adaptation of our species. This has major implications to the evolution of human physiology and potentially for the evolution of the human brain.

Towards a Combined Use of Geophysics and Remote Sensing Techniques for the Characterization of a Singular Building: "El Torreón" (the Tower) at Ulaca Oppidum (Solosancho, Ávila, Spain).

This research focuses on the study of the ruins of a large building known as "El Torreón" (the Tower), belonging to the Ulaca oppidum (Solosancho, Province of Ávila, Spain). Different remote sensing and geophysical approaches have been used to fulfil this objective, providing a better understanding of the building's functionality in this town, which belongs to the Late Iron Age (ca. 300-50 BCE). In this sense, the outer limits of the ruins have been identified using photogrammetry and convergent drone flights. An additional drone flight was conducted in the surrounding area to find additional data that could be used for more global interpretations. Magnetometry was used to analyze the underground bedrock structure and ground penetrating radar (GPR) was employed to evaluate the internal layout of the ruins. The combination of these digital methodologies (surface and underground) has provided a new perspective for the improved interpretation of "El Torreón" and its characteristics. Research of this type presents additional guidelines for better understanding of the role of this structure with regards to other buildings in the Ulaca oppidum. The results of these studies will additionally allow archaeologists to better plan future interventions while presenting new data that can be used for the interpretation of this archaeological complex on a larger scale.

Obtaining new resolutions in carnivore tooth pit morphological analyses: A methodological update for digital taphonomy.

Modern day investigation in fields of archaeology and palaeontology can be greatly characterised by an exponential growth of integrated new technologies, nevertheless, while these advances are of great significance to multiple lines of research, their evaluation and update over time is equally as important. Here we present an application of inter and intra-observer analysis in taphonomy based geometric morphometrics, employing robust non-parametric statistical analyses for the study of experimental carnivore tooth pit morphologies. To fully understand the influence of measurement errors in the collection of this data, our statistical assessment was performed on fully superimposed, partially superimposed and raw landmark coordinates collected from 3D surface scanning. Experimental samples used to assess these errors includes wolf and dog tooth pits used in modern day ecological livestock predation analysis. Results obtained from this study highlight the importance of landmark type in the assessment of error, emphasising the value of semi-landmark models over the use of ambiguous Type III landmarks. In addition to this, data also reveals the importance of observer experience for the collection of data alongside an interesting increase in error when working with fully superimposed landmarks due to the "Pinocchio Effect". Through this study we are able to redefine the geometric morphometric models used for tooth pit morphological analyses. This final hybrid Type II fixed landmark and semi-landmark model presents a significant reduction in human induced error, generating a more metrically reliable and replicable method that can be used for data pooling in future inter-institutional research. These results can be considered a fundamental step forward for carnivore inspired studies, having an impact on archaeological, palaeontological, modern-day ecological research as well as applications in other forensic sciences.

The use of canid tooth marks on bone for the identification of livestock predation.

Historically wolves and humans have had a conflictive relationship which has driven the wolf to extinction in some areas across Northern America and Europe. The last decades have seen a rise of multiple government programs to protect wolf populations. Nevertheless, these programs have been controversial in rural areas, product of the predation of livestock by carnivores. As a response to such issues, governments have presented large scale economic plans to compensate the respected owners. The current issue lies in the lack of reliable techniques that can be used to detect the predator responsible for livestock predation. This has led to complications when obtaining subsidies, creating conflict between landowners and government officials. The objectives of this study therefore are to provide a new alternative approach to differentiating between tooth marks of different predators responsible for livestock predation. Here we present the use of geometric morphometrics and Machine Learning algorithms to discern between different carnivores through in depth analysis of the tooth marks they leave on bone. These results present high classification rates with up to 100% accuracy in some cases, successfully differentiating between wolves, dogs and fox tooth marks.

Testing accuracy in 2D and 3D geometric morphometric methods for cut mark identification and classification.

The analysis of bone surface modifications (BSMs) is a prominent part of paleoanthropological studies, namely taphonomic research. Behavioral interpretations of the fossil record hinge strongly upon correct assessment of BSMs. With the significant impact of microscopic analysis to the study of BSMs, multiple authors have discussed the reliability of these technological improvements for gaining resolution in BSM discrimination. While a certain optimism is present, some important questions are ignored and others overemphasized without appropriate empirical support. This specifically affects the study of cut marks. A diversity of geometric morphometric approaches applied to the study of cut marks have resulted in the coexistence (and competition) of different 2D and 3D methods. The present work builds upon the foundation of experiments presented by Maté-González et al. (2015), Courtenay et al. (2017) and Otárola-Castillo et al. (2018) to contrast for the first time 2D and 3D methods in their resolution of cut mark interpretation and classification. The results presented here show that both approaches are equally valid and that the use of sophisticated 3D methods do not contribute to an improvement in accuracy.

Differentiating percussion pits and carnivore tooth pits using 3D reconstructions and geometric morphometrics.

During the end of the 20th century and the beginning of the 21st century the discussion on early human behavioral patterns revolved around the hunting versus scavenging debate. The correct identification of bone modifications, including percussion, cut and tooth marks, is a key issue within this debate. While many authors have shown that carnivore and human modifications can be easily distinguished, it is true that sometimes percussion marks without associated microstriations and tooth pits overlap morphologically, causing confusion, especially when unmodified hammerstones are used. In order to solve this equifinality problem, many investigations have focused their efforts on other pieces of evidence such as the identification of notches, fragmentation patterns and frequencies, among others. These studies, however, cannot be considered as fully conclusive. Within this paper we address the problem of equifinality when identifying percussion marks produced with unmodified hammerstones and tooth pits created by carnivores using new methodologies based on the 3D reconstruction of marks and their statistical multivariate analysis. For the purpose of this study a total of 128 marks- 39 percussion marks produced with an unmodified quartzite hammerstone, and 89 pits generated by different carnivores-were virtually modelled with the aid of a DAVID structured-light scanner SLS-2 and later analyzed by means of geometric morphometrics. Our results show that percussion marks not associated with striae fields and the pits generated by the carnivores studied here can be successfully distinguished.

A new high-resolution 3-D quantitative method for analysing small morphological features: an example using a Cambrian trilobite.

Taphonomic processes play an important role in the preservation of small morphological features such as granulation or pits. However, the assessment of these features may face the issue of the small size of the specimens and, sometimes, the destructiveness of these analyses, which makes impossible carrying them out in singular specimen, such as holotypes or lectotypes. This paper takes a new approach to analysing small-morphological features, by using an optical surface roughness (OSR) meter to create a high-resolution three-dimensional digital-elevation model (DEM). This non-destructive technique allows analysing quantitatively the DEM using geometric morphometric methods (GMM). We created a number of DEMs from three populations putatively belonging to the same species of trilobite (Oryctocephalus indicus) that present the same cranidial outline, but differ in the presence or absence of the second and third transglabellar furrows. Profile analysis of the DEMs demonstrate that all three populations show similar preservation variation in the glabellar furrows and lobes. The GMM shows that all populations exhibit the same range of variation. Differences in preservation are a consequence of different degrees of cementation and rates of dissolution. Fast cementation enhances the preservation of glabellar furrows and lobes, while fast dissolution hampers preservation of the same structures.

Assessment of statistical agreement of three techniques for the study of cut marks: 3D digital microscope, laser scanning confocal microscopy and micro-photogrammetry.

In the last few years, the study of cut marks on bone surfaces has become fundamental for the interpretation of prehistoric butchery practices. Due to the difficulties in the correct identification of cut marks, many criteria for their description and classification have been suggested. Different techniques, such as three-dimensional digital microscope (3D DM), laser scanning confocal microscopy (LSCM) and micro-photogrammetry (M-PG) have been recently applied to the study of cut marks. Although the 3D DM and LSCM microscopic techniques are the most commonly used for the 3D identification of cut marks, M-PG has also proved to be very efficient and a low-cost method. M-PG is a noninvasive technique that allows the study of the cortical surface without any previous preparation of the samples, and that generates high-resolution models. Despite the current application of microscopic and micro-photogrammetric techniques to taphonomy, their reliability has never been tested. In this paper, we compare 3D DM, LSCM and M-PG in order to assess their resolution and results. In this study, we analyse 26 experimental cut marks generated with a metal knife. The quantitative and qualitative information registered is analysed by means of standard multivariate statistics and geometric morphometrics to assess the similarities and differences obtained with the different methodologies.